100 ancient genomes show repeated population turnovers in Neolithic Denmark

100 ancient genomes show repeated population turnovers in Neolithic Denmark

Allentoft, M. E. et al. Population genomics of Bronze Age Eurasia. Nature 522, 167–172 (2015).

Article 
ADS 
CAS 
PubMed 

Google Scholar 

Haak, W. et al. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature 522, 207–211 (2015).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Allentoft, M. E. et al. Population genomics of post-glacial western Eurasia. Nature https://doi.org/10.1038/s41586-023-06865-0 (2024).

Posth, C. et al. Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers. Nature 615, 117–126 (2023).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Johannsen, N. N., Larson, G., Meltzer, D. J. & Vander Linden, M. A composite window into human history. Science 356, 1118–1120 (2017).

Article 
CAS 
PubMed 

Google Scholar 

Furholt, M. Mobility and social change: understanding the European Neolithic period after the archaeogenetic revolution. J. Archaeol. Res. 29, 481–535 (2021).

Article 

Google Scholar 

Kristiansen, K. Archaeology and the Genetic Revolution in European Prehistory (Elements in the Archaeology of Europe) (Cambridge Univ. Press, 2022).

Fischer, A. & Kristiansen, K. The Neolithisation of Denmark. 150 Years of Debate (J. R. Collis, 2002).

Günther, T. et al. Population genomics of Mesolithic Scandinavia: investigating early postglacial migration routes and high-latitude adaptation. PLoS Biol. 16, e2003703 (2018).

Article 
PubMed 
PubMed Central 

Google Scholar 

Kashuba, N. et al. Ancient DNA from mastics solidifies connection between material culture and genetics of mesolithic hunter–gatherers in Scandinavia. Commun. Biol. 2, 185 (2019).

Article 
PubMed 
PubMed Central 

Google Scholar 

Fischer, A. in The Neolithisation of Denmark—150 years of debate (eds Fischer, A. & Kristiansen, K.) 343–393 (J. R. Collis, 2002).

Price, T. D. Europe’s First Farmers (Cambridge Univ. Press, 2000).

Lipson, M. et al. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature 551, 368–372 (2017).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Mathieson, I. et al. The genomic history of southeastern Europe. Nature 555, 197–203 (2018).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Brace, S. et al. Ancient genomes indicate population replacement in Early Neolithic Britain. Nat. Ecol. Evol. 3, 765–771 (2019).

Article 
ADS 
PubMed 
PubMed Central 

Google Scholar 

Midgley, M. TRB Culture: The First Farmers of the North European Plain (Edinburgh Univ. Press, 1992).

Iversen, R. in Tracing the Indo-Europeans: New evidence from Archaeology and Historical Linguistics (eds Olsen, B. A., Olander, T. & Kristiansen, K.) 73–95 (Oxbow, 2019).

Nielsen, S. K. & Johannsen, N. N. Mortuary palisades, single graves, and cultural admixture: the establishment of Corded Ware culture on the Jutland Peninsula. Praehistorische Zeitschrift https://doi.org/10.1515/pz-2023-2022 (2023).

Article 

Google Scholar 

Kristiansen, K. Prehistoric migrations—the case of the Single Grave and Corded Ware Cultures. J. Dan. Archaeol. 8, 211–225 (1991).

Article 

Google Scholar 

Lewis, J. P. et al. Marine resource abundance drove pre-agricultural population increase in Stone Age Scandinavia. Nat. Commun. 11, 2006 (2020).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Sousa da Mota, B. et al. Imputation of ancient human genomes. Nat. Commun. 14, 3660 (2023).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Schilling, H. in Mesolithic on the Move (eds Larsson, L. et al.) 351–358 (2003).

Petersen, P. V. Chronological and regional variation in the Late Mesolithic of Eastern Denmark. J. Dan. Archaeol. 3, 7–18 (1984).

Article 

Google Scholar 

Fischer, A. in The Danish Storebælt Since the Ice Age (eds Pedersen, L., Fischer, A. & Aaby, B.) 63–77 (Sea and Forest, 1997).

Sørensen, S. A. The Kongemose Culture (Univ. Press of Southern Denmark, 2017).

Dolbunova, E. et al. The transmission of pottery technology among prehistoric European hunter-gatherers. Nat. Hum. Behav. 7, 171–183 (2023).

Article 
PubMed 

Google Scholar 

Klassen, L. Jade und Kupfer: Untersuchungen zum Neolithisierungsprozess im westlichen Ostseeraum unter besonderer Berücksichtigung der Kulturentwicklung Europas 5500–3500 bc vol. 47 (Aarhus Universitetsforlag, 2004).

Price, T. D. Seeking the First Farmers in Western Sjælland, Denmark: The Archaeology of the Transition to Agriculture in Northern Europe (Oxbow Books, 2022).

Hansen, J. et al. The Maglemosian skeleton from Koelbjerg revisited: Identifying sex and provenance. Dan. J. Archaeol. 6, 55–66 (2017).

Google Scholar 

Sørensen, M. in Ecology of Early Settlement in Northern Europe: Conditions for Subsistence and Survival. The Early Settlement of Northern Europe Vol. 1 (eds. Persson, P., Riede, F. & Skar, B.) 277–301 (Equinox, 2018).

Piezonka, H. et al. Stone Age pottery chronology in the Northeast European Forest Zone: new AMS and EA-IRMS results on foodcrusts. Radiocarbon 58, 267–289 (2016).

Article 
CAS 

Google Scholar 

Mathieson, I. et al. Genome-wide patterns of selection in 230 ancient Eurasians. Nature 528, 499–503 (2015).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Irving-Pease, E. K. et al. The selection landscape and genetic legacy of ancient Eurasians. Nature https://doi.org/10.1038/s41586-023-06705-1 (2024).

Fischer, A. et al. Coast-inland mobility and diet in the Danish Mesolithic and Neolithic: evidence from stable isotope values of humans and dogs. J. Archaeol. Sci. 34, 2125–2150 (2007).

Article 

Google Scholar 

Fischer, A. et al. The composition of Mesolithic food—evidence from a submerged settlement on the Argus Bank, Denmark. Acta Archaeol. 78, 163–178 (2007).

Article 

Google Scholar 

Brinch Petersen, E. Gravene ved Dragsholm. Fra jægere til bønder for 6000 år siden. Nationalmuseets Arbejdsmark 1974, 112–120 (1974).

Google Scholar 

Price, T. D. et al. New information on the Stone Age graves at Dragsholm, Denmark. Acta Archaeol. 78, 193–219 (2007).

Article 

Google Scholar 

Sørensen, L. From Hunter to Farmer in Northern Europe. Migration and adaptation during the Neolithic and Bronze Age. Acta Archaeologica Vol. 85 (Wiley–Blackwell, 2014).

Nielsen, P. O. & Nielsen, F. O. S. First Farmers on the Island of Bornholm (The Royal Society of Northern Antiquaries and Univ. Press of Southern Denmark, 2020).

Sjögren, K.-G. & Fischer, A. The chronology of Danish dolmens. Results from 14C dates on human bones. J. Neolit. Archaeol. 25, https://doi.org/10.12766/jna.2023.1 (2023).

Dehn, T. & Hansen, S. I. Birch bark in Danish passage graves. J. Dan. Archaeol. 14, 23–44 (2006).

Article 

Google Scholar 

Ebbesen, K. Simple, tidligneolitiske grave. Aarbøger for nordisk Oldkyndighed og Historie 1992, 47–102 (1994).

Gron, K. J. & Sørensen, L. Cultural and economic negotiation: a new perspective on the Neolithic Transition of Southern Scandinavia. Antiquity 92, 958–974 (2018).

Article 

Google Scholar 

Chintalapati, M., Patterson, N. & Moorjani, P. The spatiotemporal patterns of major human admixture events during the European Holocene. eLife 11, e77625 (2022).

Article 
PubMed 
PubMed Central 

Google Scholar 

González-Fortes, G. et al. Paleogenomic evidence for multi-generational mixing between Neolithic farmers and Mesolithic hunter-gatherers in the Lower Danube Basin. Curr. Biol. 27, 1801–1810.e10 (2017).

Article 
PubMed 
PubMed Central 

Google Scholar 

Villalba-Mouco, V. et al. Survival of Late Pleistocene hunter-gatherer ancestry in the Iberian Peninsula. Curr. Biol. 29, 1169–1177.e7 (2019).

Article 
CAS 
PubMed 

Google Scholar 

Jensen, T. Z. T. et al. A 5700 year-old human genome and oral microbiome from chewed birch pitch. Nat. Commun. 10, 5520 (2019).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Olalde, I. et al. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature 507, 225–228 (2014).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Cox, S. L., Ruff, C. B., Maier, R. M. & Mathieson, I. Genetic contributions to variation in human stature in prehistoric Europe. Proc. Natl Acad. Sci. USA 116, 21484–21492 (2019).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Klassen, L. (ed.) The Pitted Ware Culture on Djursland: Supra-regional Significance and Contacts in the Middle Neolithic of Southern Scandinavia (Aarhus Univ. Press, 2020).

Iversen, R., Philippsen, B. & Persson, P. Reconsidering the Pitted Ware chronology. Praehistorische Zeitschrift 96, 44–88 (2021).

Article 

Google Scholar 

Coutinho, A. et al. The Neolithic Pitted Ware culture foragers were culturally but not genetically influenced by the Battle Axe culture herders. Am. J. Phys. Anthropol. 172, 638–649 (2020).

Article 
PubMed 

Google Scholar 

Glob, P. V. Studier over den Jyske Enkeltgravskultur (Gyldendal, 1945).

Müller, J. & Vandkilde, H. in Contrasts of the Nordic Bronze Age. Essays in Honour of Christopher Prescott (eds. Austvoll, K.I., Hem Eriksen, M., Fredriksen, P.D., Melheim, A.L., Prøsch-Danielsen, L., Skogstrand, L.) 29–48 (Brepols, 2020).

Iversen, R. The Transformation of Neolithic Societies. An Eastern Danish Perspective on the 3rd Millennium BC Vol. 88 (Jutland Archaeological Society, 2015).

Damm, C. The Danish Single Grave Culture—ethnic migration or social construction? J. Dan. Archaeol. 10, 199–204 (1991).

Article 

Google Scholar 

Egfjord, A. F.-H. et al. Genomic steppe ancestry in skeletons from the Neolithic Single Grave Culture in Denmark. PLoS ONE 16, e0244872 (2021).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Grasgruber, P., Sebera, M., Hrazdíra, E., Cacek, J. & Kalina, T. Major correlates of male height: a study of 105 countries. Econ. Hum. Biol. 21, 172–195 (2016).

Article 
CAS 
PubMed 

Google Scholar 

Papac, L. et al. Dynamic changes in genomic and social structures in third millennium bce central Europe. Sci. Adv. 7, eabi6941 (2021).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Blank, M. Mobility, Subsistence and Mortuary practices. An Interdisciplinary Study of Neolithic and Early Bronze Age Megalithic Populations of Southwestern Sweden. PhD thesis, Univ. of Gothenburg (2021).

Winther Johannsen, J. Late Neolithic expansion. Dan. J. Archaeol. 12, https://doi.org/10.7146/dja.v12i1.132093 (2023).

Pedersen, C. B. et al. The iPSYCH2012 case–cohort sample: new directions for unravelling genetic and environmental architectures of severe mental disorders. Mol. Psychiatry 23, 6–14 (2017).

Article 
PubMed 
PubMed Central 

Google Scholar 

Odgaard, B. V. The Holocene vegetation history of northern West Jutland, Denmark. Nord. J. Bot. 14, 546–546 (1994).

Article 

Google Scholar 

Haak, W. et al. in The Indo-European Puzzle Revisited: Integrating Archaeology, Genetics, and Linguistics (eds Kristiansen, K., Kroonen, G. & Willerslev, E.) 63–80 (2023).

Fischer, A., Gotfredsen, A. B., Meadows, J., Pedersen, L. & Stafford, M. The Rødhals kitchen midden—marine adaptations at the end of the Mesolithic world. J. Archaeol. Sci. 39, 103102 (2021).

Google Scholar 

Bennike, P. in The Danish Storebælt Since the Ice Age (eds Pedersen, L., Fischer, A. & Aaby, B.) 99–105 (A/S Storebælt Fixed Link, 1997).

Warden, L. et al. Climate induced human demographic and cultural change in northern Europe during the mid-Holocene. Sci Rep. 7, 15251 (2017).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Krossa, V. R. et al. Regional climate change and the onset of farming in northern Germany and southern Scandinavia. Holocene 27, 1589–1599 (2017).

Article 
ADS 

Google Scholar 

Iversen, R. Arrowheads as indicators of interpersonal violence and group identity among the Neolithic Pitted Ware hunters of southwestern Scandinavia. J. Anthropol. Archaeol. 44, 69–86 (2016).

Article 

Google Scholar 

Lidke, G. Violence in the Single Grave Culture of northern Germany? in Sticks, Stones, and Broken Bones: Neolithic Violence in a European Perspective (eds Schulting, R. J. & Fibiger, L.) 139-150 https://doi.org/10.1093/acprof:osobl/9780199573066.003.0008 (Oxford, 2012).

Schroeder, H. et al. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proc. Natl Acad. Sci. USA 116, 10705–10710 (2019).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Rasmussen, S. et al. Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago. Cell 163, 571–582 (2015).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Rascovan, N. et al. Emergence and spread of basal lineages of Yersinia pestis during the Neolithic decline. Cell 176, 295–305.e10 (2019).

Article 
CAS 
PubMed 

Google Scholar 

Hinz, M. et al. in Neolithic Diversities: Perspectives from a Conference in Lund, Sweden 43–51 (Lund Univ., 2015).

Feeser, I., Dörfler, W., Kneisel, J., Hinz, M. & Dreibrodt, S. Human impact and population dynamics in the Neolithic and Bronze Age: multi-proxy evidence from north-western Central Europe. Holocene 29, 1596–1606 (2019).

Article 
ADS 

Google Scholar 

Margaryan, A. et al. Population genomics of the Viking world. Nature 585, 390–396 (2020).

Article 
ADS 
CAS 
PubMed 

Google Scholar 

Damgaard, P. B. et al. Improving access to endogenous DNA in ancient bones and teeth. Sci. Rep. 5, 11184 (2015).

Article 
ADS 
PubMed 
PubMed Central 

Google Scholar 

1000 Genomes Project Consortium. A global reference for human genetic variation. Nature 526, 68–74 (2015).

Article 

Google Scholar 

Maier, R., Flegontov, P., Flegontova, O., Işıldak, U., Changmai, P. & Reich, D. On the limits of fitting complex models of population history to f-statistics. Elife 12, e85492 (2023).

Browning, B. L. & Browning, S. R. Detecting identity by descent and estimating genotype error rates in sequence data. Am. J. Hum. Genet. 93, 840–851 (2013).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Appadurai, V. et al. Accuracy of haplotype estimation and whole genome imputation affects complex trait analyses in complex biobanks. Commun. Biol. 6, 101 (2023).

Article 
PubMed 
PubMed Central 

Google Scholar 

Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559–575 (2007).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Walsh, S. et al. The HIrisPlex system for simultaneous prediction of hair and eye colour from DNA. Forensic Sci. Int. Genet. 7, 98–115 (2013).

Article 
CAS 
PubMed 

Google Scholar 

Bycroft, C. et al. The UK Biobank resource with deep phenotyping and genomic data. Nature 562, 203–209 (2018).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Bronk Ramsey, C. Development of the radiocarbon calibration program OxCal. Radiocarbon 43, 355–363 (2001).

Article 

Google Scholar 

Bronk Ramsey, C. Deposition models for chronological records. Q. Sci. Rev. 27, 42–60 (2008).

Article 
ADS 

Google Scholar 

Bronk Ramsey, C. Bayesian analysis of radiocarbon dates. Radiocarbon 51, 337–360 (2009).

Article 

Google Scholar 

Bronk Ramsey, C. Dealing with outliers and offsets. Radiocarbon 51, 1023–1045 (2009).

Article 

Google Scholar 

Reimer, P., Austin, W. & Bard, E. The IntCal20 Northern Hemisphere radiocarbon age calibration curve (0–55 cal kbp). Radiocarbon 62, 725–757 (2020).

Article 
CAS 

Google Scholar 

Karlsberg, A. J. Flexible Bayesian Methods for Archaeological Dating. PhD thesis, Univ. Sheffield (2006).

Lee, S. & Ramsey, C. Development and application of the trapezoidal model for archaeological chronologies. Radiocarbon 54, 107–122 (2012).

Article 
CAS 

Google Scholar 

Meadows, J. et al. Dietary freshwater reservoir effects and the radiocarbon ages of prehistoric human bones from Zvejnieki, Latvia. J. Archaeol. Sci. 6, 678–689 (2016).

Google Scholar 

Rose, H. A., Meadows, J. & Bjerregaard, M. High-resolution dating of a medieval multiple grave. Radiocarbon 60, 1547–1559 (2018).

Article 
CAS 

Google Scholar 

Hedges, R. E. M., Clement, J. G., David, C., Thomas, L. & O’Connell, T. C. Collagen turnover in the adult femoral mid-shaft: modeled from anthropogenic radiocarbon tracer measurements. Am. J. Phys. Anthropol. 133, 808–816 (2007).

Article 
PubMed 

Google Scholar 

Jørkov, M. L. S., Heinemeier, J. & Lynnerup, N. The petrous bone-a new sampling site for identifying early dietary patterns in stable isotopic studies. Am. J. Phys. Anthropol. 138, 199–209 (2009).

Article 
PubMed 

Google Scholar 

Schoeninger, M. J. & Moore, K. Bone stable isotope studies in archaeology. J. World Prehist. 6, 247–296 (1992).

Article 

Google Scholar 

Hedges, R. E. M. & Reynard, L. M. Nitrogen isotopes and the trophic level of humans in archaeology. J. Archaeol. Sci. 34, 1240–1251 (2007).

Article 

Google Scholar 

Reimer, P. et al. Laboratory protocols used for AMS radiocarbon dating at the 14Chrono Centre. English Heritage Research Report Series 5-2015 https://historicengland.org.uk/research/results/reports/6272/TheQueen%E2%80%99sUniversityBelfast_LaboratoryprotocolsusedforAMSradiocarbondatingatthe14CHRONOCentre (2015).

Longin, R. New method of collagen extraction for radiocarbon dating. Nature 230, 241–242 (1971).

Article 
ADS 
CAS 
PubMed 

Google Scholar 

Ambrose, S. H. & DeNiro, M. J. The isotopic ecology of East African mammals. Oecologia 69, 395–406 (1986).

Article 
ADS 
PubMed 

Google Scholar 

van Klinken, G. J. Bone collagen quality indicators for palaeodietary and radiocarbon measurements. J. Archaeol. Sci. 26, 687–695 (1999).

Article 

Google Scholar 

Alexander Bentley, R. Strontium isotopes from the earth to the archaeological skeleton: A review. J. Archaeol. Method Theory 13, 135–187 (2006).

Article 

Google Scholar 

Frei, K. M. & Price, T. D. Strontium isotopes and human mobility in prehistoric Denmark. Archaeol. Anthropol. Sci. 4, 103–114 (2012).

Article 

Google Scholar 

Holt, E., Evans, J. A. & Madgwick, R. Strontium (87Sr/86Sr) mapping: a critical review of methods and approaches. Earth Sci. Rev. 216, 103593 (2021).

Article 
CAS 

Google Scholar 

Price, T. D., Burton, J. H. & Bentley, R. A. Characterization of biologically available strontium isotope ratios for the study of prehistoric migration. Archaeometry 44, 117–135 (2002).

Article 
CAS 

Google Scholar 

Thomsen, E., Andreasen, R. & Rasmussen, T. L. Homogeneous glacial landscapes can have high local variability of strontium isotope signatures: implications for prehistoric migration studies. Front. Ecol. Evol. 8, 588318 (2021).

Article 

Google Scholar 

Price, T. D., Klassen, L. & Sjögren, K. G. Pitted ware culture: isotopic evidence for contact between Sweden and Denmark across the Kattegat in the Middle Neolithic, ca. 3000 bc. J. Anthropol. Archaeol. 61, 101254 (2021).

Article 

Google Scholar 

Hede, M. U. Holocene Climate and Environmental Changes Recorded in High-resolution Lake Sediments from Højby Sø, Denmark. PhD thesis, Univ. Copenhagen (2008).

Sugita, S. Theory of quantitative reconstruction of vegetation I: pollen from large sites REVEALS regional vegetation composition. Holocene 17, 229–241 (2007).

Article 
ADS 

Google Scholar 

Sugita, S. Theory of quantitative reconstruction of vegetation II: all you need is LOVE. Holocene 17, 243–257 (2007).

Article 
ADS 

Google Scholar 

Nielsen, A. B. et al. Quantitative reconstructions of changes in regional openness in north-central Europe reveal new insights into old questions. Q. Sci. Rev. 47, 131–147 (2012).

Article 
ADS 

Google Scholar 

Githumbi, E. et al. Pollen-based maps of past regional vegetation cover in Europe over twelve millennia—evaluation and potential. Front. Ecol. Evol. https://doi.org/10.3389/fevo.2022.795794 (2022).

Nielsen, A. B. & Odgaard, B. V. Quantitative landscape dynamics in Denmark through the last three millennia based on the landscape reconstruction algorithm approach. Veg. Hist. Archaeobot. 19, 375–387 (2010).

Article 

Google Scholar 

Søe, N. E., Odgaard, B. V., Nielsen, A. B., Olsen, J. & Kristiansen, S. M. Late Holocene landscape development around a Roman Iron Age mass grave, Alken Enge, Denmark. Veg. Hist. Archaeobot. 26, 277–292 (2017).

Article 

Google Scholar 

Mazier, F. et al. Testing the effect of site selection and parameter setting on REVEALS-model estimates of plant abundance using the Czech Quaternary Palynological Database. Rev. Palaeobot. Palynol. 187, 38–49 (2012).

Article 

Google Scholar 

Source link : https://www.nature.com/articles/s41586-023-06862-3

Author :

Publish date : 2024-01-10 08:00:00

Copyright for syndicated content belongs to the linked Source.

Exit mobile version